yfmM [2019-04-24 13:33:32]

similar to [SW|ABC transporter] (ATP-binding protein)

locus: BSU07420

pI: 5.11

mw: 59.02 kDa

protein length: 518 aa

gene length: 1557 bp

function: unknown

product: [SW|ABC transporter] (ATP-binding protein)

essential: no

synonyms

Genomic Context

categories

• [category|SW 1|Cellular processes] → [category|SW 1.2|Transporters] → [category|SW 1.2.1|ABC transporters] → [category|SW 1.2.1.4|Unknown ABC transporters]

Gene

Coordinates: 814,384 815,940

The protein

Protein family

• [SW|ABC transporter] family (according to UniProt)
• [SW|ABCF ATPase subfamily] [pubmed|30597160]

Paralogous protein(s)

• [protein|F69F15198ACF8A8347C450EEC09F000EECEDEC41|YfmR], [protein|1F56D3275386BB54A774BFA045C09E36D1268471|YdiF], [protein|2F79DB15D359A127C2D833CC0465E18E1725F539|YkpA]

Structure

• [PDB|3J5S] (EttA from E. coli, 31% identity) [pubmed|24389465]
• [PDB|4FIN] (EttA from E. coli, 31% identity) [pubmed|24389466]

Expression and Regulation

Operons

• genes: [gene|47B644F334A0BD501E77A198A61CE0F22BAB3E5E|yfmM]
  description: [pubmed|22383849]

Biological materials

Mutant

• MGNA-C238 (yfmM::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/2236 NBRP B. subtilis, Japan]
• BKE07420 ([gene|47B644F334A0BD501E77A198A61CE0F22BAB3E5E|yfmM]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE07420 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATGTTTACACCTCTATCGT, downstream forward: _UP4_TAATTTATAAAAAAACCCGC
• BKK07420 ([gene|47B644F334A0BD501E77A198A61CE0F22BAB3E5E|yfmM]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK07420 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATGTTTACACCTCTATCGT, downstream forward: _UP4_TAATTTATAAAAAAACCCGC

References

Reviews

• 24500425,30746819

Original publications

• 10092453,24389466,24389465,27006457